Publications
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. Use of SPIDER and SPIRE in Image Reconstruction. International Tables for Crystallography [Internet]. 2012;F(Crystallography of Biological Macromolecules). http://xrpp.iucr.org/cgi-bin/itr?url_ver=Z39.88-2003&rft_dat=what%3Dchapter%26volid%3DFb%26chnumo%3D19o8%26chvers%3Dv0001
Use of SPIDER and SPIRE in image reconstruction.pdf (330.11 KB)
Use of SPIDER and SPIRE in image reconstruction.pdf (330.11 KB). Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules. J Struct Biol [Internet]. 2009;166(2):126-32. http://www.ncbi.nlm.nih.gov/pubmed/19269332 Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules.pdf (636.01 KB)
Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules.pdf (636.01 KB). Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proc Natl Acad Sci U S A [Internet]. 2009;106(4):1063-8. http://www.ncbi.nlm.nih.gov/pubmed/19122150 Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis.pdf (1.71 MB)
Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis.pdf (1.71 MB). Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome. J Struct Biol [Internet]. 2008;164(1):24-32. http://www.ncbi.nlm.nih.gov/pubmed/18606549 Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome.pdf (1.69 MB)
Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome.pdf (1.69 MB). Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification. J Struct Biol [Internet]. 2008;164(1):41-8. http://www.ncbi.nlm.nih.gov/pubmed/18619547 Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification.pdf (2.75 MB)
Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification.pdf (2.75 MB). SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc [Internet]. 2008;3(12):1941-74. http://www.ncbi.nlm.nih.gov/pubmed/19180078 SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs.pdf (2.04 MB)
SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs.pdf (2.04 MB). SPIRE: the SPIDER reconstruction engine. J Struct Biol [Internet]. 2007;157(1):56-63. http://www.ncbi.nlm.nih.gov/pubmed/17055743 SPIRE the SPIDER reconstruction engine.pdf (875.94 KB)
SPIRE the SPIDER reconstruction engine.pdf (875.94 KB). Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking. J Struct Biol [Internet]. 2005;152(3):211-20. http://www.ncbi.nlm.nih.gov/pubmed/16330229 Particle picking by segmentation a comparative study with SPIDER-based manual particle picking.pdf (727.35 KB)
Particle picking by segmentation a comparative study with SPIDER-based manual particle picking.pdf (727.35 KB). A binary segmentation approach for boxing ribosome particles in cryo EM micrographs. J Struct Biol [Internet]. 2004;145(1-2):142-51. http://www.ncbi.nlm.nih.gov/pubmed/15065681 adiga2004.pdf (577.76 KB)
adiga2004.pdf (577.76 KB). A scripting language approach to control software for cryo-electron microscopy. Proc IEEE Int. Symp. Biomed. Imag. [Internet]. 2002;. http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1029253&abstractAccess=no&userType=inst baxter2002.pdf (275.08 KB)
baxter2002.pdf (275.08 KB). Transillumination and optical properties of cardiac tissue. Optical Mapping of Cardiac Excitation and Arrhythmias. 2001;.
. Video mapping of spiral waves in the heart. Optical Mapping of Cardiac Excitation and Arrhythmias. 2001;.
. Visualizing excitation waves inside cardiac muscle using transillumination. Biophys J [Internet]. 2001;80(1):516-30. http://www.ncbi.nlm.nih.gov/pubmed/11159422 Visualizing excitation waves inside cardiac muscle using transillumination.pdf (639.82 KB)
Visualizing excitation waves inside cardiac muscle using transillumination.pdf (639.82 KB). Quantification of effects of global ischemia on dynamics of ventricular fibrillation in isolated rabbit heart. Circulation [Internet]. 1998;98(16):1688-96. http://www.ncbi.nlm.nih.gov/pubmed/9778336 Quantification of effects of global ischemia on dynamics of ventricular fibrillation in isolated rabbit heart.pdf (544.04 KB)
Quantification of effects of global ischemia on dynamics of ventricular fibrillation in isolated rabbit heart.pdf (544.04 KB). Optical mapping of drug-induced polymorphic arrhythmias and torsade de pointes in the isolated rabbit heart. J Am Coll Cardiol [Internet]. 1997;29(4):831-42. http://www.ncbi.nlm.nih.gov/pubmed/9091531 Optical mapping of drug-induced polymorphic arrhythmias and torsade de pointes in the isolated rabbit heart.pdf (915.29 KB)
Optical mapping of drug-induced polymorphic arrhythmias and torsade de pointes in the isolated rabbit heart.pdf (915.29 KB). Technical features of a CCD video camera system to record cardiac fluorescence data. Ann Biomed Eng [Internet]. 1997;25(4):713-25. http://www.ncbi.nlm.nih.gov/pubmed/9236983 Technical features of a CCD video camera system to record cardiac fluorescence data.pdf (1.86 MB)
Technical features of a CCD video camera system to record cardiac fluorescence data.pdf (1.86 MB). Video imaging of re-entry on the epicardial surface of the isolated rabbit heart. Computational Biology of the Heart [Internet]. 1997;. http://www.researchgate.net/publication/266334442_Video_imaging_of_re-entry_on_the_epicardial_surface_of_the_isolated_rabbit_heart
. Vortex shedding as a precursor of turbulent electrical activity in cardiac muscle. Biophys J [Internet]. 1996;70(3):1105-11. http://www.ncbi.nlm.nih.gov/pubmed/8785270
. Effects of pacing on stationary reentrant activity. Theoretical and experimental study. Circ Res [Internet]. 1995;77(6):1166-79. http://www.ncbi.nlm.nih.gov/pubmed/7586230
. Mechanisms of cardiac fibrillation. Science [Internet]. 1995;270(5239):1222-3; author reply 1224-5. http://www.ncbi.nlm.nih.gov/pubmed/7502055
. Nonstationary vortexlike reentrant activity as a mechanism of polymorphic ventricular tachycardia in the isolated rabbit heart. Circulation [Internet]. 1995;91(9):2454-69. http://www.ncbi.nlm.nih.gov/pubmed/7729033
. Wave-front curvature as a cause of slow conduction and block in isolated cardiac muscle. Circ Res [Internet]. 1994;75(6):1014-28. http://www.ncbi.nlm.nih.gov/pubmed/7525101
. Spiral waves of excitation underlie reentrant activity in isolated cardiac muscle. Circ Res [Internet]. 1993;72(3):631-50. http://www.ncbi.nlm.nih.gov/pubmed/8431989
. Spatiotemporal irregularities of spiral wave activity in isolated ventricular muscle. J Electrocardiol [Internet]. 1992;24 Suppl:113-22. http://www.ncbi.nlm.nih.gov/pubmed/1552240