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Frank, Joachim
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2012
Leith AD
,
Baxter B
,
Frank J
.
Use of SPIDER and SPIRE in Image Reconstruction.
International Tables for Crystallography [Internet]. 2012;F(Crystallography of Biological Macromolecules).
http://xrpp.iucr.org/cgi-bin/itr?url_ver=Z39.88-2003&rft_dat=what%3Dchapter%26volid%3DFb%26chnumo%3D19o8%26chvers%3Dv0001
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Use of SPIDER and SPIRE in image reconstruction.pdf
(330.11 KB)
2009
Baxter B
,
Grassucci RA
,
Gao H
,
Frank J
.
Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules.
J Struct Biol [Internet]. 2009;166(2):126-32.
http://www.ncbi.nlm.nih.gov/pubmed/19269332
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Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules.pdf
(636.01 KB)
Villa E
,
Sengupta J
,
Trabuco LG
,
LeBarron J
,
Baxter B
,
Shaikh TR
, et al.
.
Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis.
Proc Natl Acad Sci U S A [Internet]. 2009;106(4):1063-8.
http://www.ncbi.nlm.nih.gov/pubmed/19122150
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Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis.pdf
(1.71 MB)
2008
LeBarron J
,
Grassucci RA
,
Shaikh TR
,
Baxter B
,
Sengupta J
,
Frank J
.
Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome.
J Struct Biol [Internet]. 2008;164(1):24-32.
http://www.ncbi.nlm.nih.gov/pubmed/18606549
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Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome.pdf
(1.69 MB)
Shaikh TR
,
Trujillo R
,
LeBarron J
,
Baxter B
,
Frank J
.
Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification.
J Struct Biol [Internet]. 2008;164(1):41-8.
http://www.ncbi.nlm.nih.gov/pubmed/18619547
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Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification.pdf
(2.75 MB)
Shaikh TR
,
Gao H
,
Baxter B
,
Asturias FJ
,
Boisset N
,
Leith AD
, et al.
.
SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs.
Nat Protoc [Internet]. 2008;3(12):1941-74.
http://www.ncbi.nlm.nih.gov/pubmed/19180078
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SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs.pdf
(2.04 MB)
2007
Baxter B
,
Leith AD
,
Frank J
.
SPIRE: the SPIDER reconstruction engine.
J Struct Biol [Internet]. 2007;157(1):56-63.
http://www.ncbi.nlm.nih.gov/pubmed/17055743
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SPIRE the SPIDER reconstruction engine.pdf
(875.94 KB)
2005
Adiga U
,
Baxter B
,
Hall RJ
,
Rockel B
,
Rath BK
,
Frank J
, et al.
.
Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking.
J Struct Biol [Internet]. 2005;152(3):211-20.
http://www.ncbi.nlm.nih.gov/pubmed/16330229
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Particle picking by segmentation a comparative study with SPIDER-based manual particle picking.pdf
(727.35 KB)
2002
Baxter B
,
Leith AD
,
Frank J
.
A scripting language approach to control software for cryo-electron microscopy.
Proc IEEE Int. Symp. Biomed. Imag. [Internet]. 2002;.
http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1029253&abstractAccess=no&userType=inst
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baxter2002.pdf
(275.08 KB)
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