Leith AD, Baxter B, Frank J. Use of SPIDER and SPIRE in Image Reconstruction. International Tables for Crystallography [Internet]. 2012;F(Crystallography of Biological Macromolecules). http://xrpp.iucr.org/cgi-bin/itr?url_ver=Z39.88-2003&rft_dat=what%3Dchapter%26volid%3DFb%26chnumo%3D19o8%26chvers%3Dv0001

Baxter B, Grassucci RA, Gao H, Frank J. Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules. J Struct Biol [Internet]. 2009;166(2):126-32. http://www.ncbi.nlm.nih.gov/pubmed/19269332

Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter B, Shaikh TR, et al.. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proc Natl Acad Sci U S A [Internet]. 2009;106(4):1063-8. http://www.ncbi.nlm.nih.gov/pubmed/19122150

LeBarron J, Grassucci RA, Shaikh TR, Baxter B, Sengupta J, Frank J. Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome. J Struct Biol [Internet]. 2008;164(1):24-32. http://www.ncbi.nlm.nih.gov/pubmed/18606549

Shaikh TR, Trujillo R, LeBarron J, Baxter B, Frank J. Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification. J Struct Biol [Internet]. 2008;164(1):41-8. http://www.ncbi.nlm.nih.gov/pubmed/18619547

Shaikh TR, Gao H, Baxter B, Asturias FJ, Boisset N, Leith AD, et al.. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc [Internet]. 2008;3(12):1941-74. http://www.ncbi.nlm.nih.gov/pubmed/19180078

Baxter B, Leith AD, Frank J. SPIRE: the SPIDER reconstruction engine. J Struct Biol [Internet]. 2007;157(1):56-63. http://www.ncbi.nlm.nih.gov/pubmed/17055743

Adiga U, Baxter B, Hall RJ, Rockel B, Rath BK, Frank J, et al.. Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking. J Struct Biol [Internet]. 2005;152(3):211-20. http://www.ncbi.nlm.nih.gov/pubmed/16330229

Baxter B, Leith AD, Frank J. A scripting language approach to control software for cryo-electron microscopy. Proc IEEE Int. Symp. Biomed. Imag. [Internet]. 2002;. http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1029253&abstractAccess=no&userType=inst