02073nas a2200241   4500008004100000022001400041245011100055210006900166260001200235300001100247490000700258520141600265653001001681653000801691653000901699653000801708653001201716653001101728653000801739100001701747700001901764856004801783       2015                        eng d  a1559-008900aNeuralAct: A Tool to Visualize Electrocortical (ECoG) Activity on a Three-Dimensional Model of the Cortex.0 aNeuralAct A Tool to Visualize Electrocortical ECoG Activity on a  c04/2015  a167-740 v133 a<p>Electrocorticography (ECoG) records neural signals directly from the surface of the cortex. Due to its high temporal and favorable spatial resolution, ECoG has emerged as a valuable new tool in acquiring cortical activity in cognitive and systems neuroscience. Many studies using ECoG visualized topographies of cortical activity or statistical tests on a three-dimensional model of the cortex, but a dedicated tool for this function has not yet been described. In this paper, we describe the NeuralAct package that serves this purpose. This package takes as input the 3D coordinates of the recording sensors, a cortical model in the same coordinate system (e.g., Talairach), and the activation data to be visualized at each sensor. It then aligns the sensor coordinates with the cortical model, convolves the activation data with a spatial kernel, and renders the resulting activations in color on the cortical model. The NeuralAct package can plot cortical activations of an individual subject as well as activations averaged over subjects. It is capable to render single images as well as sequences of images. The software runs under Matlab and is stable and robust. We here provide the tool and describe its visualization capabilities and procedures. The provided package contains thoroughly documented code and includes a simple demo that guides the researcher through the functionality of the tool.</p>10aBrain10aDOT10aECoG10aEEG10aimaging10aMatlab10aMEG1 aKubanek, Jan1 aSchalk, Gerwin  uhttp://www.ncbi.nlm.nih.gov/pubmed/2538164102627nas a2200277   4500008004100000245009500041210006900136260001200205490000600217520181900223653002602042653001402068653000902082653000802091653002802099653000802127100002202135700002002157700001702177700001902194700001902213700002602232700002302258700002002281856004802301       2014                        eng d00aAssessing dynamics, spatial scale, and uncertainty in task-related brain network analyses.0 aAssessing dynamics spatial scale and uncertainty in taskrelated   c03/20140 v83 aThe brain is a complex network of interconnected elements, whose interactions evolve dynamically in time to cooperatively perform specific functions. A common technique to probe these interactions involves multi-sensor recordings of brain activity during a repeated task. Many techniques exist to characterize the resulting task-related activity, including establishing functional networks, which represent the statistical associations between brain areas. Although functional network inference is commonly employed to analyze neural time series data, techniques to assess the uncertainty—both in the functional network edges and the corresponding aggregate measures of network topology—are lacking. To address this, we describe a statistically principled approach for computing uncertainty in functional networks and aggregate network measures in task-related data. The approach is based on a resampling procedure that utilizes the trial structure common in experimental recordings. We show in simulations that this approach successfully identifies functional networks and associated measures of confidence emergent during a task in a variety of scenarios, including dynamically evolving networks. In addition, we describe a principled technique for establishing functional networks based on predetermined regions of interest using canonical correlation. Doing so provides additional robustness to the functional network inference. Finally, we illustrate the use of these methods on example invasive brain voltage recordings collected during an overt speech task. The general strategy described here—appropriate for static and dynamic network inference and different statistical measures of coupling—permits the evaluation of confidence in network measures in a variety of settings common to neuroscience.10acanonical correlation10acoherence10aECoG10aEEG10afunctional connectivity10aMEG1 aStephen, Emily, P1 aLepage, Kyle, Q1 aEden, Uri, T1 aBrunner, Peter1 aSchalk, Gerwin1 aBrumberg, Jonathan, S1 aGuenther, Frank, H1 aKramer, Mark, A  uhttp://www.ncbi.nlm.nih.gov/pubmed/24678295