@article {4334, title = {iEEGview: an open-source multifunction GUI-based Matlab toolbox for localization and visualization of human intracranial electrodes.}, journal = {J Neural Eng}, volume = {17}, year = {2019}, month = {12/2019}, pages = {016016}, abstract = {

OBJECTIVE: The precise localization of intracranial electrodes is a fundamental step relevant to the analysis of intracranial electroencephalography (iEEG) recordings in various fields. With the increasing development of iEEG studies in human neuroscience, higher requirements have been posed on the localization process, resulting in urgent demand for more integrated, easy-operation and versatile tools for electrode localization and visualization. With the aim of addressing this need, we develop an easy-to-use and multifunction toolbox called iEEGview, which can be used for the localization and visualization of human intracranial electrodes.

APPROACH: iEEGview is written in Matlab scripts and implemented with a GUI. From the GUI, by taking only pre-implant MRI and post-implant CT images as input, users can directly run the full localization pipeline including brain segmentation, image co-registration, electrode reconstruction, anatomical information identification, activation map generation and electrode projection from native brain space into common brain space for group analysis. Additionally, iEEGview implements methods for brain shift correction, visual location inspection on MRI slices and computation of certainty index in anatomical label assignment.

MAIN RESULTS: All the introduced functions of iEEGview work reliably and successfully, and are tested by images from 28 human subjects implanted with depth and/or subdural electrodes.

SIGNIFICANCE: iEEGview is the first public Matlab GUI-based software for intracranial electrode localization and visualization that holds integrated capabilities together within one pipeline. iEEGview promotes convenience and efficiency for the localization process, provides rich localization information for further analysis and offers solutions for addressing raised technical challenges. Therefore, it can serve as a useful tool in facilitating iEEG studies.

}, keywords = {Brain, Brain Mapping, Electrocorticography, Electrodes, Implanted, Electroencephalography, Humans, Magnetic Resonance Imaging}, issn = {1741-2552}, doi = {10.1088/1741-2552/ab51a5}, author = {Li, Guangye and Jiang, Shize and Chen, Chen and Peter Brunner and Wu, Zehan and Schalk, Gerwin and Chen, Liang and Zhang, Dingguo} } @article {3384, title = {Long-term recording of external urethral sphincter EMG activity in unanesthetized, unrestrained rats.}, journal = {Am J Physiol Renal Physiol}, volume = {307}, year = {2014}, month = {08/2014}, pages = {F485-97}, abstract = {

The external urethral sphincter muscle (EUS) plays an important role in urinary function and often contributes to urinary dysfunction. EUS study would benefit from methodology for longitudinal recording of electromyographic activity (EMG) in unanesthetized animals, but this muscle is a poor substrate for chronic intramuscular electrodes, and thus the required methodology has not been available. We describe a method for long-term recording of EUS EMG by implantation of fine wires adjacent to the EUS that are secured to the pubic bone. Wires pass subcutaneously to a skull-mounted plug and connect to the recording apparatus by a flexible cable attached to a commutator. A force transducer-mounted cup under a metabolic cage collected urine, allowing recording of EUS EMG and voided urine weight without anesthesia or restraint. Implant durability permitted EUS EMG recording during repeated (up to 3 times weekly) 24-h sessions for more than 8 wk. EMG and voiding properties were stable over weeks 2-8. The degree of EUS phasic activity (bursting) during voiding was highly variable, with an average of 25\% of voids not exhibiting bursting. Electrode implantation adjacent to the EUS yielded stable EMG recordings over extended periods and eliminated the confounding effects of anesthesia, physical restraint, and the potential for dislodgment of the chronically implanted intramuscular electrodes. These results show that micturition in unanesthetized, unrestrained rats is usually, but not always, associated with EUS bursting. This methodology is applicable to studying EUS behavior during progression of gradually evolving disease and injury models and in response to therapeutic interventions.

}, keywords = {Animals, Electrodes, Implanted, Electromyography, Female, Pubic Bone, Rats, Rats, Sprague-Dawley, Urethra, Urination, Urodynamics}, issn = {1522-1466}, doi = {10.1152/ajprenal.00059.2014}, url = {http://www.ncbi.nlm.nih.gov/pubmed/24990895}, author = {LaPallo, Brandon K and Jonathan Wolpaw and Xiang Yang Chen and Jonathan S. Carp} } @article {2151, title = {Decoding vowels and consonants in spoken and imagined words using electrocorticographic signals in humans.}, journal = {J Neural Eng}, volume = {8}, year = {2011}, month = {08/2011}, pages = {046028}, abstract = {

Several stories in the popular media have speculated that it may be possible to infer from the brain which word a person is speaking or even thinking. While recent studies have demonstrated that brain signals can give detailed information about actual and imagined actions, such as different types of limb movements or spoken words, concrete experimental evidence for the possibility to {\textquoteright}read the mind{\textquoteright}, i.e. to interpret internally-generated speech, has been scarce. In this study, we found that it is possible to use signals recorded from the surface of the brain (electrocorticography) to discriminate the vowels and consonants embedded in spoken and in imagined words, and we defined the cortical areas that held the most information about discrimination of vowels and consonants. The results shed light on the distinct mechanisms associated with production of vowels and consonants, and could provide the basis for brain-based communication using imagined speech.

}, keywords = {Adolescent, Adult, Brain, Brain Mapping, Cerebral Cortex, Communication Aids for Disabled, Data Interpretation, Statistical, Discrimination (Psychology), Electrodes, Implanted, Electroencephalography, Epilepsy, Female, Functional Laterality, Humans, Male, Middle Aged, Movement, Speech Perception, User-Computer Interface}, issn = {1741-2552}, doi = {10.1088/1741-2560/8/4/046028}, url = {http://www.ncbi.nlm.nih.gov/pubmed/21750369}, author = {Pei, Xiao-Mei and Barbour, Dennis L and Leuthardt, E C and Gerwin Schalk} } @article {2100, title = {Mapping broadband electrocorticographic recordings to two-dimensional hand trajectories in humans Motor control features.}, journal = {Neural Netw}, volume = {22}, year = {2009}, month = {11/2009}, pages = {1257-70}, abstract = {

Brain-machine interfaces (BMIs) aim to translate the motor intent of locked-in patients into neuroprosthetic control commands. Electrocorticographical (ECoG) signals provide promising neural inputs to BMIs as shown in recent studies. In this paper, we utilize a broadband spectrum above the fast gamma ranges and systematically study the role of spectral resolution, in which the broadband is partitioned, on the reconstruction of the patients{\textquoteright} hand trajectories. Traditionally, the power of ECoG rhythms (\<200-300 Hz) has been computed in short duration bins and instantaneously and linearly mapped to cursor trajectories. Neither time embedding, nor nonlinear mappings have been previously implemented in ECoG neuroprosthesis. Herein, mapping of neural modulations to goal-oriented motor behavior is achieved via linear adaptive filters with embedded memory depths and as a novelty through echo state networks (ESNs), which provide nonlinear mappings without compromising training complexity or increasing the number of model parameters, with up to 85\% correlation. Reconstructed hand trajectories are analyzed through spatial, spectral and temporal sensitivities. The superiority of nonlinear mappings in the cases of low spectral resolution and abundance of interictal activity is discussed.

}, keywords = {Algorithms, Brain, Brain Mapping, Electrodes, Implanted, Electrodiagnosis, Epilepsy, Feasibility Studies, Hand, Humans, Linear Models, Motor Activity, Neural Networks (Computer), Nonlinear Dynamics, Signal Processing, Computer-Assisted}, issn = {1879-2782}, doi = {10.1016/j.neunet.2009.06.036}, url = {http://www.ncbi.nlm.nih.gov/pubmed/19647981}, author = {Gunduz, Aysegul and Sanchez, Justin C and Carney, Paul R and Principe, Jose} } @article {2192, title = {A practical procedure for real-time functional mapping of eloquent cortex using electrocorticographic signals in humans.}, journal = {Epilepsy Behav}, volume = {15}, year = {2009}, month = {07/2009}, pages = {278-86}, abstract = {

Functional mapping of eloquent cortex is often necessary prior to invasive brain surgery, but current techniques that derive this mapping have important limitations. In this article, we demonstrate the first comprehensive evaluation of a rapid, robust, and practical mapping system that uses passive recordings of electrocorticographic signals. This mapping procedure is based on the BCI2000 and SIGFRIED technologies that we have been developing over the past several years. In our study, we evaluated 10 patients with epilepsy from four different institutions and compared the results of our procedure with the results derived using electrical cortical stimulation (ECS) mapping. The results show that our procedure derives a functional motor cortical map in only a few minutes. They also show a substantial concurrence with the results derived using ECS mapping. Specifically, compared with ECS maps, a next-neighbor evaluation showed no false negatives, and only 0.46 and 1.10\% false positives for hand and tongue maps, respectively. In summary, we demonstrate the first comprehensive evaluation of a practical and robust mapping procedure that could become a new tool for planning of invasive brain surgeries.

}, keywords = {Adult, Brain Mapping, Cerebral Cortex, Electric Stimulation, Electrodes, Implanted, Electroencephalography, Epilepsy, Female, Humans, Male, Middle Aged, Practice Guidelines as Topic, Signal Processing, Computer-Assisted, Young Adult}, issn = {1525-5069}, doi = {10.1016/j.yebeh.2009.04.001}, url = {http://www.ncbi.nlm.nih.gov/pubmed/19366638}, author = {Peter Brunner and A L Ritaccio and Lynch, Timothy M and Emrich, Joseph F and Adam J Wilson and Williams, Justin C and Aarnoutse, Erik J and Ramsey, Nick F and Leuthardt, E C and H Bischof and Gerwin Schalk} } @article {2189, title = {Advanced neurotechnologies for chronic neural interfaces: new horizons and clinical opportunities.}, journal = {J Neurosci}, volume = {28}, year = {2008}, month = {11/2008}, pages = {11830-8}, keywords = {Cerebral Cortex, Electrodes, Implanted, Electroencephalography, Electronics, Medical, Electrophysiology, Evoked Potentials, Movement Disorders, Neurons, Prostheses and Implants, User-Computer Interface}, issn = {1529-2401}, doi = {10.1523/JNEUROSCI.3879-08.2008}, url = {http://www.ncbi.nlm.nih.gov/pubmed/19005048?report=abstract}, author = {Kipke, Daryl R and Shain, William and Buzs{\'a}ki, Gy{\"o}rgy and Fetz, Eberhard E and Henderson, Jaimie M and Hetke, Jamille F and Gerwin Schalk} } @article {2186, title = {Two-dimensional movement control using electrocorticographic signals in humans.}, journal = {J Neural Eng}, volume = {5}, year = {2008}, month = {03/2008}, pages = {75-84}, abstract = {

We show here that a\ brain-computer\ interface (BCI) using electrocorticographic activity (ECoG) and imagined or overt motor tasks enables humans to control a\ computer\ cursor in two dimensions. Over a brief training period of 12-36 min, each of five human subjects acquired substantial control of particular ECoG features recorded from several locations over the same hemisphere, and achieved average success rates of 53-73\% in a two-dimensional four-target center-out task in which chance accuracy was 25\%. Our results support the expectation that ECoG-based BCIs can combine high performance with technical and\ clinical\ practicality, and also indicate promising directions for further research.

}, keywords = {Adolescent, Adult, Brain Mapping, Data Interpretation, Statistical, Drug Resistance, Electrocardiography, Electrodes, Implanted, Electroencephalography, Epilepsy, Female, Humans, Male, Movement, User-Computer Interface}, issn = {1741-2560}, doi = {10.1088/1741-2560/5/1/008}, url = {http://www.ncbi.nlm.nih.gov/pubmed/18310813}, author = {Gerwin Schalk and Miller, K.J. and Nicholas R Anderson and Adam J Wilson and Smyth, Matt and Ojemann, J G and Moran, D and Jonathan Wolpaw and Leuthardt, E C} } @article {2179, title = {Electrocorticographic Frequency Alteration Mapping: A Clinical Technique for Mapping the Motor Cortex.}, journal = {Neurosurgery}, volume = {60}, year = {2007}, month = {04/2007}, pages = {260-70; discussion 270-1}, abstract = {

OBJECTIVE:\ 

Electrocortical stimulation (ECS) has been well established for delineating the eloquent cortex. However, ECS is still coarse and inefficient in delineating regions of the functional cortex and can be hampered by after-discharges. Given these constraints, an adjunct approach to defining the motor cortex is the use of electrocorticographic signal changes associated with active regions of the cortex. The broad range of frequency oscillations are categorized into two main groups with respect to the sensorimotor cortex: low and high frequency bands. The low frequency bands tend to show a power reduction with cortical activation, whereas the high frequency bands show power increases. These power changes associated with the activated cortex could potentially provide a powerful tool in delineating areas of the motor cortex. We explore electrocorticographic signal alterations as they occur with activated regions of the motor cortex, as well as its potential in clinical brain mapping applications.

METHODS:\ 

We evaluated seven patients who underwent invasive monitoring for seizure localization. Each patient had extraoperative ECS mapping to identify the motor cortex. All patients also performed overt hand and tongue motor tasks to identify associated frequency power changes in regard to location and degree of concordance with ECS results that localized either hand or tongue motor function.

RESULTS:\ 

The low frequency bands had a high sensitivity (88.9-100\%) and a lower specificity (79.0-82.6\%) for identifying electrodes with either hand or tongue ECS motor responses. The high frequency bands had a lower sensitivity (72.7-88.9\%) and a higher specificity (92.4-94.9\%) in correlation with the same respective ECS positive electrodes.

CONCLUSION:\ 

The concordance between stimulation and spectral power changes demonstrate the possible utility of electrocorticographic frequency alteration mapping as an adjunct method to improve the efficiency and resolution of identifying the motor cortex.

}, keywords = {Adult, Biological Clocks, Brain Mapping, Electric Stimulation, Electrodes, Implanted, Electroencephalography, Female, Hand, Humans, Male, Middle Aged, Motor Cortex, Oscillometry, Signal Processing, Computer-Assisted, Tongue}, issn = {1524-4040}, doi = {10.1227/01.NEU.0000255413.70807.6E}, url = {http://www.ncbi.nlm.nih.gov/pubmed/17415162}, author = {Leuthardt, E C and Miller, John W and Nicholas R Anderson and Gerwin Schalk and Dowling, Joshua and Miller, John W and Moran, D and Ojemann, J G} } @article {2168, title = {A brain-computer interface using electrocorticographic signals in humans.}, journal = {J Neural Eng}, volume = {1}, year = {2004}, month = {06/2004}, pages = {63-71}, abstract = {

Brain-computer interfaces\ (BCIs) enable users to control devices with electroencephalographic (EEG) activity from the scalp or with single-neuron activity from within the\ brain. Both methods have disadvantages: EEG has limited resolution and requires extensive training, while single-neuron recording entails significant clinical risks and has limited stability. We demonstrate here for the first time that electrocorticographic (ECoG) activity recorded from the surface of the\ brain\ can enable users to control a one-dimensional\ computer\ cursor rapidly and accurately. We first identified ECoG signals that were associated with different types of motor and speech imagery. Over brief training periods of 3-24 min, four patients then used these signals to master closed-loop control and to achieve success rates of 74-100\% in a one-dimensional binary task. In additional open-loop experiments, we found that ECoG signals at frequencies up to 180 Hz encoded substantial information about the direction of two-dimensional joystick movements. Our results suggest that an ECoG-based BCI could provide for people with severe motor disabilities a non-muscular communication and control option that is more powerful than EEG-based BCIs and is potentially more stable and less traumatic than BCIs that use electrodes penetrating the\ brain.

}, keywords = {Adult, Brain, Communication Aids for Disabled, Computer Peripherals, Diagnosis, Computer-Assisted, Electrodes, Implanted, Electroencephalography, Evoked Potentials, Female, Humans, Imagination, Male, Movement Disorders, User-Computer Interface}, issn = {1741-2560}, doi = {10.1088/1741-2560/1/2/001}, url = {http://www.ncbi.nlm.nih.gov/pubmed/15876624}, author = {Leuthardt, E C and Gerwin Schalk and Jonathan Wolpaw and Ojemann, J G and Moran, D} }